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This page represents a portion of the MGH/CVRC Zebrafish Server content, originally hosted at http://zebrafish.mgh.harvard.edu.







Bulk Segregant Markers

These markers are suggested for first-pass mapping.

Marker Display Format

Bulk Segregant Protocols



Bulk Segregant Marker List

marker_id

linkage_group

map_position

Z4593

1

3.5

Z3705

1

13.4

Z5508

1

24.3

Z6974

1

32.6

Z1351

1

39

Z9704

1

51

Z6802

1

61.4

Z6283

1

72.6

Z22347

1

77.7

Z13296

1

85.1

Z4278

2

4.9

Z22747

2

24.8

Z13620

2

38.3

Z13475

2

44.3

Z13521

2

58.2

Z7358

2

68.7

Z6818

2

81.5

Z15410

2

86.2

Z3929

3

17.6

Z1185

3

30.5

Z3439

3

45.4

Z9257

3

59.6

Z10934

3

64.9

Z17222

3

78.2

Z7486

3

100.6

Z20317

3

108.7

Z3100

3

116.9

Z10983

4

9.3

Z1525

4

15.6

Z20533

4

26

Z9920

4

36.7

Z6908

4

42.6

Z11250

4

44.9

Z20450

4

61.6

Z3275

4

75.7

Z3314

5

3.5

Z11496

5

17.1

Z8921

5

28.2

Z6614

5

40.9

Z20915

5

50.3

Z5538

5

60.9

Z22250

5

72.7

Z4299

5

83.1

Z1454

5

96

Z1813

5

103

Z15448

6

3.5

Z1701

6

14.5

Z880

6

25.2

Z10914

6

39.5

Z11919

6

53.6

Z13614

6

67.9

Z9230

6

81.1

gof2

6

89.3

Z191

7

1.9

Z10785

7

8.9

Z8252

7

24

Z10441

7

36.7

Z1059

7

52.2

Z8156

7

60.6

Z1239

7

70.5

Z13880

7

83.7

Z8218

7

98.3

Z20106

8

4.9

Z8770

8

18.2

Z4956

8

30.5

Z11001

8

39.9

Z22270

8

49.3

Z6867

8

62.3

Z1052

8

79.3

Z8703

8

100.7

Z20860

9

4.8

Z10130

9

14.3

Z6268

9

23.6

Z4673

9

37.1

Z4168

9

48.8

Z10789

9

70.1

Z7564

9

86.7

Z13221

9

94.9

Z6427

10

0

Z9208

10

4.7

Z7262

10

13.4

Z8146

10

27.9

Z3835

10

48.7

Z11911

10

58.1

Z13219

10

66.2

Z14193

10

78.3

Z6754

10

92.5

Z3952

11

0

Z3362

11

8.6

Z13411

11

22.6

Z6909

11

24

Z13395

11

36.9

Z4353

11

47.9

Z8032

11

56.6

Z10727

11

65.9

Z11160

11

73.1

Z7576

12

1.3

Z4568

12

6.3

Z6920

12

22.3

Z1473

12

30.4

Z22103

12

41

Z8450

12

51.5

Z10225

12

62

Z1400

12

69.1

Z1312

12

78.7

Z5643

13

6.2

Z9951

13

21.8

Z6104

13

25.2

Z6259

13

40

Z17223

13

51.5

Z6657

13

57.3

Z4252

13

80.7

Z1523

14

4.2

Z5436

14

13.9

Z3259

14

23.3

Z5435

14

36.5

Z1257

14

51.7

Z9366

14

62.5

Z6666

14

82

Z11837

14

93.8

Z9041

15

7.3

gof18

15

18.9

Z21982

15

34.1

Z6895

15

49.3

Z21165

15

57.9

Z13230

15

67.4

Z7381

15

79.6

Z7216

15

87.5

Z5223

15

98.2

Z1642

16

4.8

Z13202

16

15

Z9881

16

27.7

Z6921

16

34.9

Z3104

16

43.4

Z8731

16

50.6

Z6984

16

59

Z15453

16

67.2

Z3126

16

78.9

Z6010

17

5.9

Z6454

17

20

Z22674

17

33.5

Z3165

17

44.5

Z21703

17

53.4

Z9692

17

68.1

Z381

17

81.1

Z1928

17

85.8

Z11685

18

7.3

Z7654

18

14.6

Z11944

18

21.5

Z8488

18

35.5

Z20605

18

43.4

Z8343

18

52.4

Z9941

18

62

Z6572

18

75.4

Z1625

19

1.1

Z4374

19

9.5

Z4825

19

19.1

Z3782

19

26

Z3816

19

38.3

Z7686

19

48.8

Z9384

19

59.4

Z5183

19

69.1

Z1651

19

81.5

Z6804

20

7.9

Z9708

20

21.2

Z9334

20

30.6

Z10056

20

38.9

Z3824

20

55.7

Z3211

20

67.5

Z20046

20

77.8

Z7171

20

92.3

Z8554

20

107.2

Z22144

20

117.1

Z13719

21

3.7

Z7405

21

13.8

Z7925

21

21.9

Z6089

21

35

Z10432

21

40.8

Z4425

21

49.4

gof16

21

110

Z1497

21

120.5

Z10508

21

129.7

Z11752

22

0

Z9516

22

6.8

Z3093

22

17.2

Z13223

22

26.7

Z10321

22

35

Z9084

22

55.8

Z3286

22

59.2

Z4682

22

68.6

Z5683

23

1.1

Z6376

23

9.4

Z4003

23

16.6

Z20039

23

30.5

Z5141

23

36.6

Z6017

23

46

Z10949

23

54.4

Z20133

23

60.1

Z7627

24

1.2

Z5075

24

2.5

Z5413

24

16.6

Z23011

24

36

Z13229

24

53.5

Z9325

24

62.9

Z20051

24

73.3

Z11862

24

76.9

Z11092

25

5.1

Z6924

25

9.8

Z13232

25

28.2

Z8224

25

40.3

Z3528

25

48.5

Z1213

25

59.9

Z8780

25

65.7

Z1431

25

71.7

= 214 markers



STS Markers for Bulk Segregant Analysis

These tables show the markers currently being used for bulk segregant analysis. Plain numbers refer to "Z markers".

Plate 1 (lg1-lg14)

 

1

2

3

4

5

6

7

8

9

10

11

12

A

22347

6283

6802

9920

20533

1525

1052

6867

22270

8032

10727

1400

B

9704

1351

6974

11496

8921

6614

11001

4956

8770

10225

8450

22103

C

5508

3705

6818

20915

5538

22250

7564

10789

4168

1473

6920

4568

D

7358

13521

13475

4299

1454

1701

4673

6268

10130

5643

9951

6104

E

13620

22747

1185

880

10914

11919

14193

13219

11911

6259

17223

6657

F

3439

9257

10934

13614

9230

10785

3835

8146

7262

4252

5436

3259

G

17222

7486

20317

8252

10441

1059

9208

3362

13411

5435

1257

 

H

20450

11250

6908

8156

1239

13880

6909

13395

4353

9366

6666

 

Plate 2 (lg15-lg25)

 

1

2

3

4

5

6

7

8

9

10

11

12

A

7216

7381

13230

11944

7654

5183

9516

3093

13223

 

 

 

B

21165

6895

21982

9384

7686

3816

10321

9084

3286

 

 

 

C

gof18

15453

6984

3782

4825

4374

6376

4003

20039

 

 

 

D

8731

3104

6921

8554

7171

20046

5141

6017

10949

 

 

 

E

9881

13202

381

3211

3824

10056

5075

5413

23011

 

 

 

F

9692

21703

3165

9334

9708

1497

13229

9325

20051

 

 

 

G

22674

6454

9941

gof16

4425

10432

11092

13232

8224

 

 

 

H

8343

20605

8488

6089

7925

7405

3528

1213

8780

 

 

 

Plate 3 (telomeric markers, all but lg13)* arranged for analysis of 1 pool (lg15-lg25)

 

1

2

3

4

5

6

7

8

9

10

11

12

A

13296

4593

15410

4278

3929

3100

3275

10983

3314

1813

15448

gof2

B

191

8218

8703

20106

13221

20860

6754

6427

3952

11160

1312

7576

C

1523

11837

5223

9041

3126

1642

1928

6010

6572

11685

1651

1625

D

22144

6804

10508

13719

11752

4682

5683

20133

7627

11862

6924

1431

E

 

 

 

 

 

 

 

 

 

 

 

 

F

 

 

 

 

 

 

 

 

 

 

 

 

G

 

 

 

 

 

 

 

 

 

 

 

 

H